PAST
Pathway Association Study Tool (PAST)
Bioconductor version: 3.23 · Package version: 1.28.0
PAST takes GWAS output and assigns SNPs to genes, uses those genes to find pathways associated with the genes, and plots pathways based on significance. Implements methods for reading GWAS input data, finding genes associated with SNPs, calculating enrichment score and significance of pathways, and plotting pathways.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PAST")Details
| Maintainer | Thrash Adam <thrash@igbb.msstate.edu> |
| Author | Thrash Adam [cre, aut], DeOrnellis Mason [aut] |
| License | GPL (>=3) + file LICENSE |
| URL | https://github.com/IGBB/past |
| Bug Reports | https://github.com/IGBB/past/issues |
| Downloads rank | 322 |
| Source branch | RELEASE_3_23 |
| biocViews | GeneSetEnrichment, Pathways, Software |
Documentation
Download
Dependencies
Depends: R (>= 4.0)
Imports: stats, utils, dplyr, rlang, iterators, parallel, foreach, doParallel, qvalue, rtracklayer, ggplot2, GenomicRanges, S4Vectors