OrganismDbi

Software to enable the smooth interfacing of different database packages

Bioconductor version: 3.23 · Package version: 1.54.0

The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OrganismDbi")

Details

Maintainer	Bioconductor Package Maintainer <maintainer@bioconductor.org>
Author	Marc Carlson [aut], Martin Morgan [aut], Valerie Obenchain [aut], Aliyu Atiku Mustapha [ctb] (Converted 'OrganismDbi' vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]
License	Artistic-2.0
Downloads rank	3411
Source branch	RELEASE_3_23
biocViews	Annotation, Infrastructure, Software

Documentation

OrganismDbi: A meta framework for Annotation Packages

Download

Source package

Dependencies

Depends: R (>= 2.14.0), BiocGenerics (>= 0.15.10), AnnotationDbi (>= 1.33.15), Seqinfo, GenomicFeatures (>= 1.61.4)

Imports: methods, utils, stats, DBI, BiocManager, Biobase, graph, RBGL, S4Vectors, IRanges, GenomicRanges (>= 1.61.1)

Suggests: txdbmaker, GenomeInfoDbData, Homo.sapiens, Rattus.norvegicus, BSgenome.Hsapiens.UCSC.hg19, AnnotationHub, FDb.UCSC.tRNAs, rtracklayer, biomaRt, RUnit, RMariaDB, BiocStyle, knitr

Reverse dependencies

Depends On Me (3): Homo.sapiens, Mus.musculus, Rattus.norvegicus

Imports Me (4): AnnotationHubData, epivizrData, ggbio, uncoverappLib

Suggests Me (2): ChIPpeakAnno, epivizrStandalone