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Omixer

Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies

Bioconductor version: 3.23 · Package version: 1.22.0

Omixer - an Bioconductor package for multivariate and reproducible sample randomization, which ensures optimal sample distribution across batches with well-documented methods. It outputs lab-friendly sample layouts, reducing the risk of sample mixups when manually pipetting randomized samples.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Omixer")

Details

MaintainerLucy Sinke <l.j.sinke@lumc.nl>
AuthorLucy Sinke [cre, aut]
LicenseMIT + file LICENSE
Bug Reportshttps://github.com/molepi/Omixer/issues
Downloads rank219
Source branchRELEASE_3_23
biocViewsDataRepresentation, ExperimentalDesign, QualityControl, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.0.0)

Imports: dplyr, ggplot2, forcats, tibble, gridExtra, magrittr, readr, tidyselect, grid, stats, stringr

Suggests: knitr, rmarkdown, BiocStyle, magick, testthat