OmicsMLRepoR

Search harmonized metadata created under the OmicsMLRepo project

Bioconductor version: 3.23 · Package version: 1.6.0

This package provides functions to browse the harmonized metadata for large omics databases. This package also supports data navigation if the metadata incorporates ontology.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OmicsMLRepoR")

Details

Maintainer	Sehyun Oh <shbrief@gmail.com>
Author	Sehyun Oh [aut, cre] (ORCID: <https://orcid.org/0000-0002-9490-3061>), Kaelyn Long [aut]
License	Artistic-2.0
URL	https://github.com/shbrief/OmicsMLRepoR
Bug Reports	https://github.com/shbrief/OmicsMLRepoR/issues
Downloads rank	119
Source branch	RELEASE_3_23
biocViews	DataRepresentation, Infrastructure, Software

Documentation

OmicsMLRepoR - Quickstart

Download

Source package

Dependencies

Depends: R (>= 4.4.0)

Imports: dplyr, stringr, rols, tidyr, methods, stats, tibble, data.tree, jsonlite, plyr, BiocFileCache, readr, DiagrammeR, rlang, lubridate

Suggests: arrow, knitr, BiocStyle, curatedMetagenomicData, testthat (>= 3.0.0), cBioPortalData

Reverse dependencies

Suggests Me (1): curatedMetagenomicData