OmaDB
R wrapper for the OMA REST API
Bioconductor version: 3.23 · Package version: 2.28.0
A package for the orthology prediction data download from OMA database.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OmaDB")Details
| Maintainer | Klara Kaleb <klara.kaleb18@ic.ac.uk>, Adrian Altenhoff <adrian.altenhoff@inf.ethz.ch> |
| Author | Klara Kaleb |
| License | GPL-3 |
| URL | https://github.com/DessimozLab/OmaDB |
| Bug Reports | https://github.com/DessimozLab/OmaDB/issues |
| Downloads rank | 400 |
| Source branch | RELEASE_3_23 |
| biocViews | Annotation, ComparativeGenomics, FunctionalGenomics, FunctionalPrediction, GO, Genetics, Software |
Documentation
- Exploring Hierarchical orthologous groups with OmaDB
- Exploring Taxonomic trees with OmaDB
- Get started with OmaDB
- Sequence Analysis with OmaDB
Download
Dependencies
Depends: R (>= 3.5), httr (>= 1.2.1), plyr (>= 1.8.4)
Imports: utils, ape, Biostrings, GenomicRanges, IRanges, methods, topGO, jsonlite
Reverse dependencies
Suggests Me (2): orthogene, PhyloProfile