NanoStringNCTools

NanoString nCounter Tools

Bioconductor version: 3.23 · Package version: 1.20.0

Tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NanoStringNCTools")

Details

Maintainer	Maddy Griswold <mgriswold@nanostring.com>
Author	Patrick Aboyoun [aut], Nicole Ortogero [aut], Maddy Griswold [cre], Zhi Yang [ctb]
License	MIT
Downloads rank	702
Source branch	RELEASE_3_23
biocViews	CellBasedAssays, DataImport, GeneExpression, ProprietaryPlatforms, Proteomics, RNASeq, Software, Transcription, Transcriptomics, mRNAMicroarray

Documentation

Introduction to the NanoStringRCCSet Class

Download

Source package

Dependencies

Depends: R (>= 3.6), Biobase, S4Vectors, ggplot2

Imports: BiocGenerics, Biostrings, ggbeeswarm, ggiraph, ggthemes, grDevices, IRanges, methods, pheatmap, RColorBrewer, stats, utils

Suggests: biovizBase, ggbio, RUnit, rmarkdown, knitr, qpdf

Reverse dependencies

Depends On Me (2): GeomxTools, GeoMxWorkflows

Imports Me (1): GeoDiff