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MultimodalExperiment

Integrative Bulk and Single-Cell Experiment Container

Bioconductor version: 3.23 · Package version: 1.12.0

MultimodalExperiment is an S4 class that integrates bulk and single-cell experiment data; it is optimally storage-efficient, and its methods are exceptionally fast. It effortlessly represents multimodal data of any nature and features normalized experiment, subject, sample, and cell annotations, which are related to underlying biological experiments through maps. Its coordination methods are opt-in and employ database-like join operations internally to deliver fast and flexible management of multimodal data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MultimodalExperiment")

Details

MaintainerLucas Schiffer <schiffer.lucas@gmail.com>
AuthorLucas Schiffer [aut, cre] (ORCID: <https://orcid.org/0000-0003-3628-0326>)
LicenseArtistic-2.0
Downloads rank221
Source branchRELEASE_3_23
biocViewsDataRepresentation, Infrastructure, SingleCell, Software

Documentation

Download

Dependencies

Depends: R (>= 4.3.0), IRanges, S4Vectors

Imports: BiocGenerics, MultiAssayExperiment, methods, utils

Suggests: BiocStyle, knitr, rmarkdown