MsDataHub

Mass Spectrometry Data on ExperimentHub

Bioconductor version: 3.23 · Package version: 1.12.0

The MsDataHub package uses the ExperimentHub infrastructure to distribute raw mass spectrometry data files, peptide spectrum matches or quantitative data from proteomics and metabolomics experiments.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsDataHub")

Details

Maintainer	Laurent Gatto <laurent.gatto@uclouvain.be>
Author	Laurent Gatto [aut, cre] (ORCID: <https://orcid.org/0000-0002-1520-2268>), Kristina Gomoryova [ctb] (ORCID: <https://orcid.org/0000-0003-4407-3917>), Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Guillaume Deflandre [ctb] (ORCID: <https://orcid.org/0009-0008-1257-2416>)
License	Artistic-2.0
URL	https://rformassspectrometry.github.io/MsDataHub
Bug Reports	https://github.com/RforMassSpectrometry/MsDataHub/issues
Downloads rank	332
Source branch	RELEASE_3_23
biocViews	ExperimentHubSoftware, MassSpectrometry, Metabolomics, Proteomics, Software

Documentation

Mass Spectrometry Data on ExperimentHub

Download

Source package

Dependencies

Imports: ExperimentHub, utils

Suggests: ExperimentHubData, DT, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), Spectra, mzR, PSMatch, QFeatures (>= 1.13.3)

Reverse dependencies

Imports Me (1): MsQuality

Suggests Me (14): MetaboAnnotation, MetaboAnnotatoR, MsBackendSql, MsExperiment, MSnbase, msqrob2, mzR, PSMatch, QFeatures, scp, Spectra, SpectraQL, SpectriPy, xcms