MsBackendSql
SQL-based Mass Spectrometry Data Backend
Bioconductor version: 3.23 · Package version: 1.12.0
SQL-based mass spectrometry (MS) data backend supporting also storange and handling of very large data sets. Objects from this package are supposed to be used with the Spectra Bioconductor package. Through the MsBackendSql with its minimal memory footprint, this package thus provides an alternative MS data representation for very large or remote MS data sets.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MsBackendSql") Details
| Maintainer | Johannes Rainer <Johannes.Rainer@eurac.edu> |
| Author | Johannes Rainer [aut, cre] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Chong Tang [ctb], Laurent Gatto [ctb] (ORCID: <https://orcid.org/0000-0002-1520-2268>) |
| License | Artistic-2.0 |
| URL | https://github.com/RforMassSpectrometry/MsBackendSql |
| Bug Reports | https://github.com/RforMassSpectrometry/MsBackendSql/issues |
| Downloads rank | 274 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
Documentation
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Dependencies
Depends: R (>= 4.2.0), Spectra (>= 1.19.8)
Imports: BiocParallel, S4Vectors, methods, ProtGenerics (>= 1.35.3), DBI, MsCoreUtils, IRanges, data.table, progress, stringi, fastmatch, BiocGenerics
Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), RSQLite, MsDataHub, rmarkdown, microbenchmark, mzR
Reverse dependencies
Suggests Me (1): MsExperiment