MsBackendRawFileReader

Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files

Bioconductor version: 3.23 · Package version: 1.18.0

implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsBackendRawFileReader")

Details

Maintainer	Christian Panse <cp@fgcz.ethz.ch>
Author	Christian Panse [aut, cre] (ORCID: <https://orcid.org/0000-0003-1975-3064>), Tobias Kockmann [aut] (ORCID: <https://orcid.org/0000-0002-1847-885X>), Roger Gine Bertomeu [ctb] (ORCID: <https://orcid.org/0000-0003-0288-9619>)
License	GPL-3
URL	https://github.com/fgcz/MsBackendRawFileReader
Bug Reports	https://github.com/fgcz/MsBackendRawFileReader/issues
System Requirements	mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows.
Downloads rank	282
Source branch	RELEASE_3_23
biocViews	MassSpectrometry, Metabolomics, Proteomics, Software

Documentation

On Using and Extending the MsBackendRawFileReader Backend

Download

Source package

Dependencies

Depends: R (>= 4.1), methods, Spectra (>= 1.15.10)

Imports: ProtGenerics (>= 1.35.3), MsCoreUtils, S4Vectors, IRanges, rawrr (>= 1.17.2), utils, BiocParallel

Suggests: BiocStyle (>= 2.5), ExperimentHub, MsBackendMgf, knitr, lattice, mzR, protViz (>= 0.7), rmarkdown, tartare (>= 1.5), testthat