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MsBackendMsp

Mass Spectrometry Data Backend for NIST msp Files

Bioconductor version: 3.23 · Package version: 1.16.0

Mass spectrometry (MS) data backend supporting import and handling of MS/MS spectra from NIST MSP Format (msp) files. Import of data from files with different MSP *flavours* is supported. Objects from this package add support for MSP files to Bioconductor's Spectra package. This package is thus not supposed to be used without the Spectra package that provides a complete infrastructure for MS data handling.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsBackendMsp")

Details

MaintainerJohannes Rainer <Johannes.Rainer@eurac.edu>
AuthorNeumann Steffen [aut] (ORCID: <https://orcid.org/0000-0002-7899-7192>), Johannes Rainer [aut, cre] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Michael Witting [ctb] (ORCID: <https://orcid.org/0000-0002-1462-4426>)
LicenseArtistic-2.0
URLhttps://github.com/RforMassSpectrometry/MsBackendMsp
Bug Reportshttps://github.com/RforMassSpectrometry/MsBackendMsp/issues
Downloads rank521
Source branchRELEASE_3_23
biocViewsDataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software

Documentation

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Dependencies

Depends: R (>= 4.1.0), Spectra (>= 1.5.14)

Imports: ProtGenerics (>= 1.35.3), BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats, data.table

Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), rmarkdown

Reverse dependencies

Imports Me (1): lcmsPlot