MsBackendMsp
Mass Spectrometry Data Backend for NIST msp Files
Bioconductor version: 3.23 · Package version: 1.16.0
Mass spectrometry (MS) data backend supporting import and handling of MS/MS spectra from NIST MSP Format (msp) files. Import of data from files with different MSP *flavours* is supported. Objects from this package add support for MSP files to Bioconductor's Spectra package. This package is thus not supposed to be used without the Spectra package that provides a complete infrastructure for MS data handling.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MsBackendMsp") Details
| Maintainer | Johannes Rainer <Johannes.Rainer@eurac.edu> |
| Author | Neumann Steffen [aut] (ORCID: <https://orcid.org/0000-0002-7899-7192>), Johannes Rainer [aut, cre] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Michael Witting [ctb] (ORCID: <https://orcid.org/0000-0002-1462-4426>) |
| License | Artistic-2.0 |
| URL | https://github.com/RforMassSpectrometry/MsBackendMsp |
| Bug Reports | https://github.com/RforMassSpectrometry/MsBackendMsp/issues |
| Downloads rank | 521 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
Documentation
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Dependencies
Depends: R (>= 4.1.0), Spectra (>= 1.5.14)
Imports: ProtGenerics (>= 1.35.3), BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats, data.table
Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), rmarkdown
Reverse dependencies
Imports Me (1): lcmsPlot