MsBackendMgf
Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files
Bioconductor version: 3.23 · Package version: 1.20.1
Mass spectrometry (MS) data backend supporting import and export of MS/MS spectra data from Mascot Generic Format (mgf) files. Objects defined in this package are supposed to be used with the Spectra Bioconductor package. This package thus adds mgf file support to the Spectra package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MsBackendMgf") Details
| Maintainer | RforMassSpectrometry Package Maintainer <maintainer@rformassspectrometry.org> |
| Author | RforMassSpectrometry Package Maintainer [cre], Laurent Gatto [aut] (ORCID: <https://orcid.org/0000-0002-1520-2268>), Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Sebastian Gibb [aut] (ORCID: <https://orcid.org/0000-0001-7406-4443>), Michael Witting [ctb] (ORCID: <https://orcid.org/0000-0002-1462-4426>), Adriano Rutz [ctb] (ORCID: <https://orcid.org/0000-0003-0443-9902>), Corey Broeckling [ctb] (ORCID: <https://orcid.org/0000-0002-6158-827X>) |
| License | Artistic-2.0 |
| URL | https://github.com/RforMassSpectrometry/MsBackendMgf |
| Bug Reports | https://github.com/RforMassSpectrometry/MsBackendMgf/issues |
| Downloads rank | 919 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
Documentation
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Dependencies
Depends: R (>= 4.0), Spectra (>= 1.5.14)
Imports: ProtGenerics (>= 1.35.3), BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats, data.table
Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), rmarkdown
Reverse dependencies
Suggests Me (4): CompoundDb, MsBackendRawFileReader, SpectriPy, xcms