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MsBackendMassbank

Mass Spectrometry Data Backend for MassBank record Files

Bioconductor version: 3.23 · Package version: 1.20.0

Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsBackendMassbank")

Details

MaintainerRforMassSpectrometry Package Maintainer <maintainer@rformassspectrometry.org>
AuthorRforMassSpectrometry Package Maintainer [cre], Michael Witting [aut] (ORCID: <https://orcid.org/0000-0002-1462-4426>), Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Michael Stravs [ctb]
LicenseArtistic-2.0
URLhttps://github.com/RforMassSpectrometry/MsBackendMassbank
Bug Reportshttps://github.com/RforMassSpectrometry/MsBackendMassbank/issues
Downloads rank273
Source branchRELEASE_3_23
biocViewsDataImport, Infrastructure, MassSpectrometry, Metabolomics, Software

Documentation

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Dependencies

Depends: R (>= 4.0), Spectra (>= 1.21.5)

Imports: BiocParallel, S4Vectors, IRanges, methods, ProtGenerics (>= 1.35.3), MsCoreUtils, DBI, utils

Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), RSQLite, rmarkdown