MsBackendMassbank
Mass Spectrometry Data Backend for MassBank record Files
Bioconductor version: 3.23 · Package version: 1.20.0
Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MsBackendMassbank") Details
| Maintainer | RforMassSpectrometry Package Maintainer <maintainer@rformassspectrometry.org> |
| Author | RforMassSpectrometry Package Maintainer [cre], Michael Witting [aut] (ORCID: <https://orcid.org/0000-0002-1462-4426>), Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Michael Stravs [ctb] |
| License | Artistic-2.0 |
| URL | https://github.com/RforMassSpectrometry/MsBackendMassbank |
| Bug Reports | https://github.com/RforMassSpectrometry/MsBackendMassbank/issues |
| Downloads rank | 273 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, Infrastructure, MassSpectrometry, Metabolomics, Software |
Documentation
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Dependencies
Depends: R (>= 4.0), Spectra (>= 1.21.5)
Imports: BiocParallel, S4Vectors, IRanges, methods, ProtGenerics (>= 1.35.3), MsCoreUtils, DBI, utils
Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), RSQLite, rmarkdown