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MouseGastrulationData

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Bioconductor version: 3.23 · Package version: 1.26.0

Provides processed and raw count data for single-cell RNA sequencing, single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MouseGastrulationData")

Details

MaintainerJonathan Griffiths <jonathan.griffiths.94@gmail.com>
AuthorJonathan Griffiths [aut, cre], Aaron Lun [aut]
LicenseGPL-3
URLhttps://github.com/MarioniLab/MouseGastrulationData
Bug Reportshttps://github.com/MarioniLab/MouseGastrulationData/issues
Downloads rank315
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData, SequencingData, SingleCellData

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Dependencies

Depends: R (>= 4.1), SingleCellExperiment, SummarizedExperiment, SpatialExperiment

Imports: methods, ExperimentHub, BiocGenerics, S4Vectors, BumpyMatrix

Suggests: BiocStyle, knitr, rmarkdown, testthat

Reverse dependencies

Suggests Me (2): Coralysis, miloR