MouseFM

In-silico methods for genetic finemapping in inbred mice

Bioconductor version: 3.23 · Package version: 1.22.0

This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MouseFM")

Maintainer	Matthias Munz <matthias.munz@gmx.de>
Author	Matthias Munz [aut, cre] (ORCID: <https://orcid.org/0000-0002-4728-3357>), Inken Wohlers [aut] (ORCID: <https://orcid.org/0000-0003-4004-0464>), Hauke Busch [aut] (ORCID: <https://orcid.org/0000-0003-4763-4521>)
License	GPL-3
Bug Reports	https://github.com/matmu/MouseFM/issues
Downloads rank	240
Source branch	RELEASE_3_23
biocViews	BiomedicalInformatics, FunctionalGenomics, GenePrediction, GeneTarget, Genetics, GenomicVariation, MathematicalBiology, MultipleComparison, PatternLogic, SNP, Software, SystemsBiology, VariantAnnotation

Dependencies

Depends: R (>= 4.0.0)

Imports: httr, curl, GenomicRanges, dplyr, ggplot2, reshape2, scales, gtools, tidyr, data.table, jsonlite, rlist, Seqinfo, methods, biomaRt, stats, IRanges

Suggests: BiocStyle, testthat, knitr, rmarkdown