MotifDb
An Annotated Collection of Protein-DNA Binding Sequence Motifs
Bioconductor version: 3.23 · Package version: 1.54.0
More than 9900 annotated position frequency matrices from 14 public sources, for multiple organisms.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MotifDb")Details
| Maintainer | Paul Shannon <pshannon@systemsbiology.org> |
| Author | Paul Shannon, Matt Richards |
| License | Artistic-2.0 | file LICENSE |
| Downloads rank | 1175 |
| Source branch | RELEASE_3_23 |
| biocViews | MotifAnnotation, Software |
Documentation
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Dependencies
Depends: R (>= 3.5.0), methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, Biostrings
Imports: rtracklayer, splitstackshape
Suggests: RUnit, seqLogo, BiocStyle, knitr, rmarkdown, formatR, markdown
Reverse dependencies
Depends On Me (2): generegulation, motifbreakR
Suggests Me (15): ATACseqQC, DiffLogo, enhancerHomologSearch, igvR, memes, MMDiff2, motifcounter, motifStack, motifTestR, profileScoreDist, PWMEnrich, rTRM, TFutils, universalmotif, vtpnet