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MetaboSignal

MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways

Bioconductor version: 3.23 · Package version: 1.42.1

MetaboSignal is an R package that allows merging, analyzing and customizing metabolic and signaling KEGG pathways. It is a network-based approach designed to explore the topological relationship between genes (signaling- or enzymatic-genes) and metabolites, representing a powerful tool to investigate the genetic landscape and regulatory networks of metabolic phenotypes.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaboSignal")

Details

MaintainerAndrea Rodriguez-Martinez <andrea.rodriguez-martinez13@imperial.ac.uk>, Rafael Ayala <rafaelayalahernandez@gmail.com>
AuthorAndrea Rodriguez-Martinez, Rafael Ayala, Joram M. Posma, Ana L. Neves, Maryam Anwar, Jeremy K. Nicholson, Marc-Emmanuel Dumas
LicenseGPL-3
Downloads rank410
Source branchRELEASE_3_23
biocViewsGeneSignaling, GeneTarget, GraphAndNetwork, KEGG, Network, Pathways, Reactome, Software

Documentation

Download

Dependencies

Depends: R (>= 3.3)

Imports: KEGGgraph, hpar, igraph, RCurl, KEGGREST, EnsDb.Hsapiens.v75, stats, graphics, utils, org.Hs.eg.db, biomaRt, AnnotationDbi, MWASTools, mygene

Suggests: RUnit, BiocGenerics, knitr, BiocStyle, rmarkdown