MetaboCoreUtils
Core Utils for Metabolomics Data
Bioconductor version: 3.23 · Package version: 1.20.1
MetaboCoreUtils defines metabolomics-related core functionality provided as low-level functions to allow a data structure-independent usage across various R packages. This includes functions to calculate between ion (adduct) and compound mass-to-charge ratios and masses or functions to work with chemical formulas. The package provides also a set of adduct definitions and information on some commercially available internal standard mixes commonly used in MS experiments.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MetaboCoreUtils") Details
| Maintainer | Johannes Rainer <Johannes.Rainer@eurac.edu> |
| Author | Johannes Rainer [aut, cre] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Michael Witting [aut] (ORCID: <https://orcid.org/0000-0002-1462-4426>), Andrea Vicini [aut], Liesa Salzer [ctb] (ORCID: <https://orcid.org/0000-0003-0761-0656>), Sebastian Gibb [aut] (ORCID: <https://orcid.org/0000-0001-7406-4443>), Michael Stravs [ctb] (ORCID: <https://orcid.org/0000-0002-1426-8572>), Roger Gine [aut] (ORCID: <https://orcid.org/0000-0003-0288-9619>), William Kumler [aut] (ORCID: <https://orcid.org/0000-0002-5022-8009>), Philippine Louail [aut] (ORCID: <https://orcid.org/0009-0007-5429-6846>), Gabriele Tomè [aut] (ORCID: <https://orcid.org/0000-0002-3976-6068>, fnd: MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program.) |
| License | Artistic-2.0 |
| URL | https://github.com/RforMassSpectrometry/MetaboCoreUtils |
| Bug Reports | https://github.com/RforMassSpectrometry/MetaboCoreUtils/issues |
| Downloads rank | 3497 |
| Source branch | RELEASE_3_23 |
| biocViews | Infrastructure, MassSpectrometry, Metabolomics, Software |
Documentation
Download
Dependencies
Depends: R (>= 4.0)
Imports: utils, MsCoreUtils, BiocParallel, methods, stats
Suggests: BiocStyle, testthat, knitr, rmarkdown, robustbase
Reverse dependencies
Imports Me (6): CompoundDb, MetaboAnnotation, MsQuality, pubchem.bio, Spectra, xcms