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MetaboCoreUtils

Core Utils for Metabolomics Data

Bioconductor version: 3.23 · Package version: 1.20.1

MetaboCoreUtils defines metabolomics-related core functionality provided as low-level functions to allow a data structure-independent usage across various R packages. This includes functions to calculate between ion (adduct) and compound mass-to-charge ratios and masses or functions to work with chemical formulas. The package provides also a set of adduct definitions and information on some commercially available internal standard mixes commonly used in MS experiments.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaboCoreUtils")

Details

MaintainerJohannes Rainer <Johannes.Rainer@eurac.edu>
AuthorJohannes Rainer [aut, cre] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Michael Witting [aut] (ORCID: <https://orcid.org/0000-0002-1462-4426>), Andrea Vicini [aut], Liesa Salzer [ctb] (ORCID: <https://orcid.org/0000-0003-0761-0656>), Sebastian Gibb [aut] (ORCID: <https://orcid.org/0000-0001-7406-4443>), Michael Stravs [ctb] (ORCID: <https://orcid.org/0000-0002-1426-8572>), Roger Gine [aut] (ORCID: <https://orcid.org/0000-0003-0288-9619>), William Kumler [aut] (ORCID: <https://orcid.org/0000-0002-5022-8009>), Philippine Louail [aut] (ORCID: <https://orcid.org/0009-0007-5429-6846>), Gabriele Tomè [aut] (ORCID: <https://orcid.org/0000-0002-3976-6068>, fnd: MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program.)
LicenseArtistic-2.0
URLhttps://github.com/RforMassSpectrometry/MetaboCoreUtils
Bug Reportshttps://github.com/RforMassSpectrometry/MetaboCoreUtils/issues
Downloads rank3497
Source branchRELEASE_3_23
biocViewsInfrastructure, MassSpectrometry, Metabolomics, Software

Documentation

Download

Dependencies

Depends: R (>= 4.0)

Imports: utils, MsCoreUtils, BiocParallel, methods, stats

Suggests: BiocStyle, testthat, knitr, rmarkdown, robustbase

Reverse dependencies

Imports Me (6): CompoundDb, MetaboAnnotation, MsQuality, pubchem.bio, Spectra, xcms