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MetaboAnnotation

Utilities for Annotation of Metabolomics Data

Bioconductor version: 3.23 · Package version: 1.16.0

High level functions to assist in annotation of (metabolomics) data sets. These include functions to perform simple tentative annotations based on mass matching but also functions to consider m/z and retention times for annotation of LC-MS features given that respective reference values are available. In addition, the function provides high-level functions to simplify matching of LC-MS/MS spectra against spectral libraries and objects and functionality to represent and manage such matched data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaboAnnotation")

Details

MaintainerJohannes Rainer <Johannes.Rainer@eurac.edu>
AuthorMichael Witting [aut] (ORCID: <https://orcid.org/0000-0002-1462-4426>), Johannes Rainer [aut, cre] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Andrea Vicini [aut] (ORCID: <https://orcid.org/0000-0001-9438-6909>), Carolin Huber [aut] (ORCID: <https://orcid.org/0000-0002-9355-8948>), Philippine Louail [aut] (ORCID: <https://orcid.org/0009-0007-5429-6846>), Nir Shachaf [ctb]
LicenseArtistic-2.0
URLhttps://github.com/RforMassSpectrometry/MetaboAnnotation
Bug Reportshttps://github.com/RforMassSpectrometry/MetaboAnnotation/issues
Downloads rank398
Source branchRELEASE_3_23
biocViewsInfrastructure, MassSpectrometry, Metabolomics, Software

Documentation

Download

Dependencies

Depends: R (>= 4.0.0)

Imports: BiocGenerics, MsCoreUtils, MetaboCoreUtils, ProtGenerics, methods, S4Vectors, Spectra (>= 1.21.5), BiocParallel, SummarizedExperiment, QFeatures, AnnotationHub, graphics, CompoundDb

Suggests: testthat, knitr, MsDataHub, BiocStyle, rmarkdown, plotly, shiny, shinyjs, msentropy, DT, microbenchmark, mzR

Enhances: RMariaDB, RSQLite