MetaNeighbor

Single cell replicability analysis

Bioconductor version: 3.23 · Package version: 1.32.0

MetaNeighbor allows users to quantify cell type replicability across datasets using neighbor voting.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaNeighbor")

Maintainer	Stephan Fischer <fischer@cshl.edu>
Author	Megan Crow [aut, cre], Sara Ballouz [ctb], Manthan Shah [ctb], Stephan Fischer [ctb], Jesse Gillis [aut]
License	MIT + file LICENSE
Status	Deprecated
Downloads rank	313
Source branch	RELEASE_3_23
biocViews	GO, GeneExpression, ImmunoOncology, MultipleComparison, SingleCell, Software, Transcriptomics

Dependencies

Depends: R (>= 3.5)

Imports: grDevices, graphics, methods, stats (>= 3.4), utils (>= 3.4), Matrix (>= 1.2), matrixStats (>= 0.54), beanplot (>= 1.2), gplots (>= 3.0.1), RColorBrewer (>= 1.1.2), SummarizedExperiment (>= 1.12), SingleCellExperiment, igraph, dplyr, tidyr, tibble, ggplot2

Suggests: knitr (>= 1.17), rmarkdown (>= 1.6), testthat (>= 1.0.2), UpSetR