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MetMashR

Metabolite Mashing with R

Bioconductor version: 3.23 · Package version: 1.6.0

A package to merge, filter sort, organise and otherwise mash together metabolite annotation tables. Metabolite annotations can be imported from multiple sources (software) and combined using workflow steps based on S4 class templates derived from the `struct` package. Other modular workflow steps such as filtering, merging, splitting, normalisation and rest-api queries are included.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetMashR")

Details

MaintainerGavin Rhys Lloyd <g.r.lloyd@bham.ac.uk>
AuthorGavin Rhys Lloyd [aut, cre] (ORCID: <https://orcid.org/0000-0001-7989-6695>), Ralf Johannes Maria Weber [aut]
LicenseGPL-3
URLhttps://computational-metabolomics.github.io/MetMashR/
Bug Reportshttps://github.com/computational-metabolomics/MetMashR/issues
Downloads rank153
Source branchRELEASE_3_23
biocViewsKEGG, Metabolomics, Software, WorkflowStep

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Dependencies

Depends: R (>= 4.3.0), struct

Imports: dplyr, methods, httr, scales, ggthemes, utils, rlang, stats, ggplot2

Suggests: covr, httptest, knitr, rmarkdown, testthat (>= 3.0.0), rgoslin, DT, RSQLite, CompoundDb, BiocStyle, BiocFileCache, msPurity, rsvg, metabolomicsWorkbenchR, KEGGREST, plyr, magick, structToolbox, ggVennDiagram, patchwork, XML, GO.db, tidytext, tidyr, tidyselect, ComplexUpset, jsonlite, openxlsx, ggplotify, cowplot