MatrixGenerics
S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
Bioconductor version: 3.23 · Package version: 1.24.0
S4 generic functions modeled after the 'matrixStats' API for alternative matrix implementations. Packages with alternative matrix implementation can depend on this package and implement the generic functions that are defined here for a useful set of row and column summary statistics. Other package developers can import this package and handle a different matrix implementations without worrying about incompatibilities.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MatrixGenerics") Details
| Maintainer | Peter Hickey <peter.hickey@gmail.com> |
| Author | Constantin Ahlmann-Eltze [aut] (ORCID: <https://orcid.org/0000-0002-3762-068X>), Peter Hickey [aut, cre] (ORCID: <https://orcid.org/0000-0002-8153-6258>), Hervé Pagès [aut] |
| License | Artistic-2.0 |
| URL | https://bioconductor.org/packages/MatrixGenerics |
| Bug Reports | https://github.com/Bioconductor/MatrixGenerics/issues |
| Downloads rank | 49979 |
| Source branch | RELEASE_3_23 |
| biocViews | Infrastructure, Software |
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Dependencies
Depends: matrixStats (>= 1.4.1)
Imports: methods
Suggests: Matrix, sparseMatrixStats, SparseArray, DelayedArray, DelayedMatrixStats, SummarizedExperiment, testthat (>= 2.1.0)
Reverse dependencies
Depends On Me (7): DelayedArray, DelayedMatrixStats, GenomicFiles, SparseArray, sparseMatrixStats, SummarizedExperiment, VariantAnnotation
Imports Me (57): atena, Banksy, blase, carnation, CoreGx, crisprDesign, CTexploreR, dbMatrix, DeconvoBuddies, demuxSNP, DESeq2, dreamlet, escape, FLAMES, gCrisprTools, genefilter, glmGamPoi, GSVA, imcRtools, lemur, lineagespot, methodical, mia, miaSim, miloR, MinimumDistance, MultiAssayExperiment, muscat, omicsGMF, PDATK, plaid, RaggedExperiment, RAIDS, RCSL, SanityR, saseR, scater, scFeatures, scone, scPCA, scran, scuttle, scviR, Seqtometry, shinyMethyl, spatialLIBD, spatzie, StabMap, tadar, TENxIO, tLOH, tpSVG, transformGamPoi, universalmotif, VanillaICE, Voyager, zitools
Suggests Me (4): bnem, cypress, MoBPS, MungeSumstats