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MatrixGenerics

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

Bioconductor version: 3.23 · Package version: 1.24.0

S4 generic functions modeled after the 'matrixStats' API for alternative matrix implementations. Packages with alternative matrix implementation can depend on this package and implement the generic functions that are defined here for a useful set of row and column summary statistics. Other package developers can import this package and handle a different matrix implementations without worrying about incompatibilities.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MatrixGenerics")

Details

MaintainerPeter Hickey <peter.hickey@gmail.com>
AuthorConstantin Ahlmann-Eltze [aut] (ORCID: <https://orcid.org/0000-0002-3762-068X>), Peter Hickey [aut, cre] (ORCID: <https://orcid.org/0000-0002-8153-6258>), Hervé Pagès [aut]
LicenseArtistic-2.0
URLhttps://bioconductor.org/packages/MatrixGenerics
Bug Reportshttps://github.com/Bioconductor/MatrixGenerics/issues
Downloads rank49979
Source branchRELEASE_3_23
biocViewsInfrastructure, Software

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Dependencies

Depends: matrixStats (>= 1.4.1)

Imports: methods

Suggests: Matrix, sparseMatrixStats, SparseArray, DelayedArray, DelayedMatrixStats, SummarizedExperiment, testthat (>= 2.1.0)

Reverse dependencies

Depends On Me (7): DelayedArray, DelayedMatrixStats, GenomicFiles, SparseArray, sparseMatrixStats, SummarizedExperiment, VariantAnnotation

Imports Me (57): atena, Banksy, blase, carnation, CoreGx, crisprDesign, CTexploreR, dbMatrix, DeconvoBuddies, demuxSNP, DESeq2, dreamlet, escape, FLAMES, gCrisprTools, genefilter, glmGamPoi, GSVA, imcRtools, lemur, lineagespot, methodical, mia, miaSim, miloR, MinimumDistance, MultiAssayExperiment, muscat, omicsGMF, PDATK, plaid, RaggedExperiment, RAIDS, RCSL, SanityR, saseR, scater, scFeatures, scone, scPCA, scran, scuttle, scviR, Seqtometry, shinyMethyl, spatialLIBD, spatzie, StabMap, tadar, TENxIO, tLOH, tpSVG, transformGamPoi, universalmotif, VanillaICE, Voyager, zitools

Suggests Me (4): bnem, cypress, MoBPS, MungeSumstats