MOSim

Multi-Omics Simulation (MOSim)

Bioconductor version: 3.23 · Package version: 2.8.0

MOSim package simulates multi-omic experiments that mimic regulatory mechanisms within the cell, allowing flexible experimental design including time course and multiple groups.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MOSim")

Details

Maintainer	Sonia Tarazona <sotacam@gmail.com>
Author	Carolina Monzó [aut], Carlos Martínez [aut], Sonia Tarazona [cre, aut]
License	GPL-3
URL	https://github.com/ConesaLab/MOSim
Bug Reports	https://github.com/ConesaLab/MOSim/issues
Downloads rank	327
Source branch	RELEASE_3_23
biocViews	ExperimentalDesign, RNASeq, Software, TimeCourse

Documentation

Download

Source package

Dependencies

Depends: R (>= 4.2.0)

Imports: HiddenMarkov, zoo, IRanges, S4Vectors, dplyr, ggplot2, lazyeval, matrixStats, methods, rlang, stringi, stringr, scran, Seurat, Signac, edgeR, Rcpp

LinkingTo: cpp11, Rcpp

Suggests: testthat, knitr, rmarkdown, codetools, BiocStyle, stats, utils, purrr, scales, tibble, tidyr, Biobase, scater, SingleCellExperiment, decor, markdown, Rsamtools, igraph, leiden, bluster