MOSClip

Multi Omics Survival Clip

Bioconductor version: 3.23 · Package version: 1.6.0

Topological pathway analysis tool able to integrate multi-omics data. It finds survival-associated modules or significant modules for two-class analysis. This tool have two main methods: pathway tests and module tests. The latter method allows the user to dig inside the pathways itself.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MOSClip")

Details

Maintainer	Paolo Martini <paolo.martini@unibs.it>
Author	Paolo Martini [aut, cre] (ORCID: <https://orcid.org/0000-0002-0146-1031>), Anna Bortolato [aut] (ORCID: <https://orcid.org/0009-0009-9327-6084>), Anna Tanada [aut] (ORCID: <https://orcid.org/0000-0003-3224-0538>), Enrica Calura [aut] (ORCID: <https://orcid.org/0000-0001-8463-2432>), Stefania Pirrotta [aut] (ORCID: <https://orcid.org/0009-0004-0030-217X>), Federico Agostinis [aut]
License	AGPL-3
URL	https://github.com/CaluraLab/MOSClip/
Bug Reports	https://github.com/CaluraLab/MOSClip/issues
Downloads rank	176
Source branch	RELEASE_3_23
biocViews	DimensionReduction, GraphAndNetwork, Pathways, Reactome, Regression, Software, StatisticalMethod, Survival

Documentation

MOSClip vignette

Download

Source package

Dependencies

Depends: R (>= 4.4.0)

Imports: MultiAssayExperiment, methods, survminer, graph, graphite, AnnotationDbi, checkmate, ggplot2, gridExtra, igraph, pheatmap, survival, RColorBrewer, SuperExactTest, reshape, NbClust, S4Vectors, grDevices, graphics, stats, utils, ComplexHeatmap, FactoMineR, circlize, corpcor, coxrobust, elasticnet, gRbase, ggplotify, qpgraph, org.Hs.eg.db, Matrix

Suggests: RUnit, BiocGenerics, MASS, BiocStyle, knitr, EDASeq, rmarkdown, kableExtra, testthat (>= 3.0.0)