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MOGAMUN

MOGAMUN: A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks

Bioconductor version: 3.23 · Package version: 1.22.0

MOGAMUN is a multi-objective genetic algorithm that identifies active modules in a multiplex biological network. This allows analyzing different biological networks at the same time. MOGAMUN is based on NSGA-II (Non-Dominated Sorting Genetic Algorithm, version II), which we adapted to work on networks.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MOGAMUN")

Details

MaintainerElva-María Novoa-del-Toro <elvanov@hotmail.com>
AuthorElva-María Novoa-del-Toro [aut, cre] (ORCID: <https://orcid.org/0000-0002-6135-5839>)
LicenseGPL-3 + file LICENSE
URLhttps://github.com/elvanov/MOGAMUN
Downloads rank240
Source branchRELEASE_3_23
biocViewsBiomedicalInformatics, Clustering, DifferentialExpression, GraphAndNetwork, Network, Software, SystemsBiology, Transcriptomics

Documentation

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Dependencies

Imports: stats, utils, RCy3, stringr, graphics, grDevices, RUnit, BiocParallel, igraph

Suggests: knitr, markdown