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Lheuristic

Detection of scatterplots with L-shaped pattern

Bioconductor version: 3.23 · Package version: 1.4.0

The Lheuristic package identifies scatterpots that follow and L-shaped, negative distribution. It can be used to identify genes regulated by methylation by integration of an expression and a methylation array. The package uses two different methods to detect expression and methyaltion L- shapped scatterplots. The parameters can be changed to detect other scatterplot patterns.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Lheuristic")

Details

MaintainerSanchez Pla Alex <asanchez@ub.edu>
AuthorSanchez Pla Alex [aut, cre] (ORCID: <https://orcid.org/0000-0002-8673-7737>), Miro Cau Berta [aut] (ORCID: <https://orcid.org/0000-0001-6049-8697>)
LicenseMIT + file LICENSE
URLhttps://github.com/ASPresearch/Lheuristic
Bug Reportshttps://github.com/ASPresearch/Lheuristic/issues
Downloads rank131
Source branchRELEASE_3_23
biocViewsDNAMethylation, MethylationArray, Software, StatisticalMethod

Documentation

Download

Dependencies

Depends: R (>= 4.4.0)

Imports: Hmisc, stats, energy, grDevices, graphics, utils, MultiAssayExperiment, ggplot2, ggpubr

Suggests: knitr, rmarkdown, testthat (>= 3.0.0)