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KEGGREST

Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)

Bioconductor version: 3.23 · Package version: 1.52.2

A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. Only for academic use by academic users belonging to academic institutions (see <https://www.kegg.jp/kegg/rest/>). Note that KEGGREST is based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("KEGGREST")

Details

MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
AuthorDan Tenenbaum [aut], Bioconductor Package Maintainer [aut, cre], Martin Morgan [ctb], Kozo Nishida [ctb], Marcel Ramos [ctb], Kristina Riemer [ctb], Lori Shepherd [ctb], Jeremy Volkening [ctb]
LicenseArtistic-2.0
URLhttps://bioconductor.org/packages/KEGGREST
Bug Reportshttps://github.com/Bioconductor/KEGGREST/issues
Downloads rank43796
Source branchRELEASE_3_23
biocViewsAnnotation, KEGG, Pathways, Software, ThirdPartyClient

Documentation

Download

Dependencies

Depends: R (>= 3.5.0)

Imports: methods, httr, png, Biostrings

Suggests: RUnit, BiocGenerics, BiocStyle, knitr, markdown

Reverse dependencies

Depends On Me (1): ROntoTools

Imports Me (28): ADAM, adSplit, AnnotationDbi, attract, BiocSet, ChIPpeakAnno, CNEr, EnrichmentBrowser, famat, FELLA, funOmics, gage, ginmappeR, KEGGlincs, MetaboDynamics, MetaboSignal, MWASTools, NoRCE, PADOG, pairkat, pathview, RnaSeqSampleSize, SBGNview, SMITE, terapadog, transomics2cytoscape, WayFindR, YAPSA

Suggests Me (22): anansi, CALANGO, Category, categoryCompare, dmGsea, gatom, GenomicRanges, ggpicrust2, globaltest, Hiiragi2013, iSEEu, maGUI, MetMashR, MLP, padma, phoenics, ReporterScore, rGREAT, RTopper, scDiffCom, SomaScan.db, ume