IsoCorrectoR
Correction for natural isotope abundance and tracer purity in MS and MS/MS data from stable isotope labeling experiments
Bioconductor version: 3.23 · Package version: 1.30.0
IsoCorrectoR performs the correction of mass spectrometry data from stable isotope labeling/tracing metabolomics experiments with regard to natural isotope abundance and tracer impurity. Data from both MS and MS/MS measurements can be corrected (with any tracer isotope: 13C, 15N, 18O...), as well as ultra-high resolution MS data from multiple-tracer experiments (e.g. 13C and 15N used simultaneously). See the Bioconductor package IsoCorrectoRGUI for a graphical user interface to IsoCorrectoR. NOTE: With R version 4.0.0, writing correction results to Excel files may currently not work on Windows. However, writing results to csv works as before.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IsoCorrectoR") Details
| Maintainer | Christian Kohler <christian.kohler@ur.de> |
| Author | Christian Kohler [cre, aut], Paul Heinrich [aut] |
| License | GPL-3 |
| URL | https://genomics.ur.de/files/IsoCorrectoR/ |
| Downloads rank | 255 |
| Source branch | RELEASE_3_23 |
| biocViews | ImmunoOncology, MassSpectrometry, Metabolomics, Preprocessing, Software |
Documentation
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Dependencies
Depends: R (>= 3.5)
Imports: dplyr, magrittr, methods, quadprog, readr, readxl, stringr, tibble, tools, utils, pracma, WriteXLS
Suggests: IsoCorrectoRGUI, knitr, rmarkdown, testthat, BiocStyle
Reverse dependencies
Imports Me (1): IsoCorrectoRGUI