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InteractiveComplexHeatmap

Make Interactive Complex Heatmaps

Bioconductor version: 3.23 · Package version: 1.20.0

This package can easily make heatmaps which are produced by the ComplexHeatmap package into interactive applications. It provides two types of interactivities: 1. on the interactive graphics device, and 2. on a Shiny app. It also provides functions for integrating the interactive heatmap widgets for more complex Shiny app development.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("InteractiveComplexHeatmap")

Details

MaintainerZuguang Gu <guzuguang@suat-sz.edu.cn>
AuthorZuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>)
LicenseMIT + file LICENSE
URLhttps://github.com/jokergoo/InteractiveComplexHeatmap
Bug Reportshttps://github.com/jokergoo/InteractiveComplexHeatmap/issues
Downloads rank698
Source branchRELEASE_3_23
biocViewsSequencing, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.0.0), ComplexHeatmap (>= 2.11.0)

Imports: grDevices, stats, shiny, grid, GetoptLong, S4Vectors (>= 0.26.1), digest, IRanges, kableExtra (>= 1.3.1), utils, svglite, htmltools, clisymbols, jsonlite, RColorBrewer, fontawesome

Suggests: knitr, rmarkdown, testthat, EnrichedHeatmap, GenomicRanges, data.table, circlize, GenomicFeatures, tidyverse, tidyHeatmap, cluster, org.Hs.eg.db, simplifyEnrichment, GO.db, SC3, GOexpress, SingleCellExperiment, scater, gplots, pheatmap, airway, DESeq2, DT, cola, BiocManager, gridtext, HilbertCurve (>= 1.21.1), shinydashboard, SummarizedExperiment, pkgndep, ks

Reverse dependencies

Imports Me (4): CRISPRball, gINTomics, goatea, mineSweepR

Suggests Me (5): CTexploreR, dtGAP, metasnf, simona, simplifyEnrichment