INSPEcT
Modeling RNA synthesis, processing and degradation with RNA-seq data
Bioconductor version: 3.23 · Package version: 1.42.0
INSPEcT (INference of Synthesis, Processing and dEgradation rates from Transcriptomic data) RNA-seq data in time-course experiments or steady-state conditions, with or without the support of nascent RNA data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("INSPEcT")Details
| Maintainer | Stefano de Pretis <ste.depo@gmail.com>, Mattia Furlan <Mattia.Furlan@iit.it> |
| Author | Stefano de Pretis |
| License | GPL-2 |
| Downloads rank | 488 |
| Source branch | RELEASE_3_23 |
| biocViews | GeneRegulation, RNASeq, Sequencing, Software, SystemsBiology, TimeCourse |
Documentation
- INSPEcT - INference of Synthesis, Processing and dEgradation rates from Transcriptomic data
- INSPEcT-GUI
Download
Dependencies
Depends: R (>= 3.6), methods, Biobase, BiocParallel
Imports: pROC, deSolve, rootSolve, KernSmooth, readxl, GenomicFeatures, GenomicRanges, IRanges, BiocGenerics, GenomicAlignments, Rsamtools, S4Vectors, Seqinfo, DESeq2, plgem, rtracklayer, SummarizedExperiment, TxDb.Mmusculus.UCSC.mm9.knownGene, shiny