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HuBMAPR

Interface to 'HuBMAP'

Bioconductor version: 3.23 · Package version: 1.6.2

'HuBMAP' provides an open, global bio-molecular atlas of the human body at the cellular level. The `datasets()`, `samples()`, `donors()`, `publications()`, and `collections()` functions retrieves the information for each of these entity types. `*_details()` are available for individual entries of each entity type. `*_derived()` are available for retrieving derived datasets or samples for individual entries of each entity type. Data files can be accessed using `bulk_data_transfer()`.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HuBMAPR")

Details

MaintainerChristine Hou <chris2018hou@gmail.com>
AuthorChristine Hou [aut, cre] (ORCID: <https://orcid.org/0009-0001-5350-0629>), Martin Morgan [aut] (ORCID: <https://orcid.org/0000-0002-5874-8148>), Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>)
LicenseArtistic-2.0
URLhttps://christinehou11.github.io/HuBMAPR/, https://github.com/christinehou11/HuBMAPR
Bug Reportshttps://github.com/christinehou11/HuBMAPR/issues
Downloads rank157
Source branchRELEASE_3_23
biocViewsDataImport, Infrastructure, SingleCell, Software, Spatial, ThirdPartyClient

Documentation

Download

Dependencies

Depends: R (>= 4.4.0)

Imports: httr2, dplyr, tidyr, tibble, rjsoncons, utils, stringr, whisker, purrr, rlang

Suggests: testthat (>= 3.0.0), knitr, ggplot2, rmarkdown, BiocStyle