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HiContactsData

HiContacts companion data package

Bioconductor version: 3.23 · Package version: 1.14.0

Provides a collection of Hi-C files (pairs, (m)cool and fastq). These datasets can be read into R and further investigated and visualized with the HiContacts package. Data includes yeast Hi-C data generated by the Koszul lab from the Pasteur Institute.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HiContactsData")

Details

MaintainerJacques Serizay <jacquesserizay@gmail.com>
AuthorJacques Serizay [aut, cre]
LicenseMIT + file LICENSE
URLhttps://github.com/js2264/HiContactsData
Bug Reportshttps://github.com/js2264/HiContactsData/issues
Downloads rank133
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, SequencingData

Download

Dependencies

Depends: ExperimentHub

Imports: BiocFileCache, AnnotationHub

Suggests: testthat, methods, BiocStyle, knitr, rmarkdown

Reverse dependencies

Suggests Me (5): HiCExperiment, HiContacts, HiCool, HiSpaR, plyinteractions