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HPAanalyze

Retrieve and analyze data from the Human Protein Atlas

Bioconductor version: 3.23 · Package version: 1.30.0

Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data. HPAanalyze is designed to fullfill 3 main tasks: (1) Import, subsetting and export downloadable datasets; (2) Visualization of downloadable datasets for exploratory analysis; and (3) Working with the individual XML files. This package aims to serve researchers with little programming experience, but also allow power users to use the imported data as desired.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HPAanalyze")

Details

MaintainerAnh Nhat Tran <trannhatanh89@gmail.com>
AuthorAnh Nhat Tran [aut, cre]
LicenseGPL-3 + file LICENSE
URLhttps://github.com/anhtr/HPAanalyze
Bug Reportshttps://github.com/anhtr/HPAanalyze/issues
Downloads rank399
Source branchRELEASE_3_23
biocViewsCellBiology, Proteomics, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 3.5.0)

Imports: dplyr, openxlsx, ggplot2, tibble, xml2, stats, utils, gridExtra

Suggests: knitr, rmarkdown, devtools, BiocStyle