HMP2Data
16s rRNA sequencing data from the Human Microbiome Project 2
Bioconductor version: 3.23 · Package version: 1.25.0
HMP2Data is a Bioconductor package of the Human Microbiome Project 2 (HMP2) 16S rRNA sequencing data. Processed data is provided as phyloseq, SummarizedExperiment, and MultiAssayExperiment class objects. Individual matrices and data.frames used for building these S4 class objects are also provided in the package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HMP2Data") Details
| Maintainer | John Stansfield <stansfieldjc@vcu.edu>, Ekaterina Smirnova <ekaterina.smirnova@vcuhealth.org> |
| Author | John Stansfield <stansfieldjc@vcu.edu>, Ekaterina Smirnova <ekaterina.smirnova@vcuhealth.org>, Ni Zhao <nzhao10@jhu.edu>, Jennifer Fettweis <jennifer.fettweis@vcuhealth.org>, Levi Waldron <levi.waldron@sph.cuny.edu>, Mikhail Dozmorov <mikhail.dozmorov@vcuhealth.org> |
| License | Artistic-2.0 |
| URL | https://github.com/jstansfield0/HMP2Data |
| Bug Reports | https://github.com/jstansfield0/HMP2Data/issues |
| Downloads rank | 175 |
| Source branch | RELEASE_3_23 |
| biocViews | ExperimentData, Homo_sapiens_Data, MicrobiomeData, ReproducibleResearch, SequencingData |
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Dependencies
Depends: R (>= 3.6.0)
Imports: AnnotationHub, assertthat, dplyr, ExperimentHub, kableExtra, knitr, magrittr, methods, readr, S4Vectors, SummarizedExperiment, phyloseq, MultiAssayExperiment, data.table
Suggests: Biobase, BiocCheck, BiocManager, BiocStyle, cowplot, devtools, ggplot2, gridExtra, haven, rmarkdown, roxygen2, stats, testthat, tibble, UpSetR