HIPPO
Heterogeneity-Induced Pre-Processing tOol
Bioconductor version: 3.23 · Package version: 1.24.0
For scRNA-seq data, it selects features and clusters the cells simultaneously for single-cell UMI data. It has a novel feature selection method using the zero inflation instead of gene variance, and computationally faster than other existing methods since it only relies on PCA+Kmeans rather than graph-clustering or consensus clustering.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HIPPO") Details
| Maintainer | Tae Kim <tk382@uchicago.edu> |
| Author | Tae Kim [aut, cre], Mengjie Chen [aut] |
| License | GPL (>=2) |
| URL | https://github.com/tk382/HIPPO |
| Bug Reports | https://github.com/tk382/HIPPO/issues |
| Downloads rank | 222 |
| Source branch | RELEASE_3_23 |
| biocViews | Clustering, DifferentialExpression, GeneExpression, Sequencing, SingleCell, Software |