HCAData
Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor
Bioconductor version: 3.23 · Package version: 1.28.0
This package allows a direct access to the dataset generated by the Human Cell Atlas project for further processing in R and Bioconductor, in the comfortable format of SingleCellExperiment objects (available in other formats here: http://preview.data.humancellatlas.org/).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HCAData") Details
| Maintainer | Federico Marini <marinif@uni-mainz.de> |
| Author | Federico Marini [aut, cre] (ORCID: <https://orcid.org/0000-0003-3252-7758>) |
| License | MIT + file LICENSE |
| URL | https://github.com/federicomarini/HCAData |
| Downloads rank | 188 |
| Source branch | RELEASE_3_23 |
| biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SingleCellData |
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Dependencies
Depends: R (>= 3.6), SingleCellExperiment
Imports: ExperimentHub, AnnotationHub, HDF5Array, utils
Suggests: knitr, rmarkdown, BiocStyle, scran (>= 1.11.4), BiocSingular, scater, scuttle, Rtsne, igraph, iSEE, testthat