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HCAData

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Bioconductor version: 3.23 · Package version: 1.28.0

This package allows a direct access to the dataset generated by the Human Cell Atlas project for further processing in R and Bioconductor, in the comfortable format of SingleCellExperiment objects (available in other formats here: http://preview.data.humancellatlas.org/).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HCAData")

Details

MaintainerFederico Marini <marinif@uni-mainz.de>
AuthorFederico Marini [aut, cre] (ORCID: <https://orcid.org/0000-0003-3252-7758>)
LicenseMIT + file LICENSE
URLhttps://github.com/federicomarini/HCAData
Downloads rank188
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, ExpressionData, RNASeqData, SingleCellData

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Dependencies

Depends: R (>= 3.6), SingleCellExperiment

Imports: ExperimentHub, AnnotationHub, HDF5Array, utils

Suggests: knitr, rmarkdown, BiocStyle, scran (>= 1.11.4), BiocSingular, scater, scuttle, Rtsne, igraph, iSEE, testthat