GenomicDistributionsData

Reference data for GenomicDistributions package

Bioconductor version: 3.23 · Package version: 1.20.0

This package provides ready to use reference data for GenomicDistributions package. Raw data was obtained from ensembldb and processed with helper functions. Data files are available for the following genome assemblies: hg19, hg38, mm9 and mm10.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenomicDistributionsData")

Details

Maintainer	Kristyna Kupkova <kristynakupkova@gmail.com>
Author	Michal Stolarczyk [aut], Kristyna Kupkova [aut, cre], Jose Verdezoto [aut], John Lawson [ctb], Jason Smith [ctb], Nathan C. Sheffield [ctb]
License	BSD_2_clause + file LICENSE
Bug Reports	http://github.com/databio/GenomicDistributionsData
Downloads rank	150
Source branch	RELEASE_3_23
biocViews	ExperimentData, ExperimentHub, Genome

Download

Source package

Dependencies

Depends: R (>= 4.1)

Imports: ExperimentHub (>= 1.14.0), AnnotationHub, AnnotationFilter, data.table, utils, BSgenome, GenomeInfoDb, GenomicFeatures, GenomicRanges, ensembldb

Suggests: knitr, BiocStyle, rmarkdown

Reverse dependencies

Suggests Me (1): GenomicDistributions