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GenomicCoordinates

Enhanced string parsing for genomic coordinates

Bioconductor version: 3.23 · Package version: 1.0.0

Extends string parsing capabilities for genomic coordinates, supporting various formats including comma-separated numbers, space-delimited coordinates, and automatic detection of GRanges, GPos, and GInteractions objects.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenomicCoordinates")

Details

MaintainerJacques Serizay <jacquesserizay@gmail.com>
AuthorJacques Serizay [aut, cre] (ORCID: <https://orcid.org/0000-0002-4295-0624>)
LicenseArtistic-2.0
URLhttps://github.com/js2264/GenomicCoordinates
Bug Reportshttps://github.com/js2264/GenomicCoordinates/issues
Downloads rank47
Source branchRELEASE_3_23
biocViewsDataRepresentation, GenomeAnnotation, Infrastructure, Software

Documentation

Download

Dependencies

Depends: R (>= 4.5), GenomicRanges, IRanges

Imports: S4Vectors, Seqinfo, InteractionSet, methods, plyranges, plyinteractions

Suggests: testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle