GSEABase

Gene set enrichment data structures and methods

Bioconductor version: 3.23 · Package version: 1.74.0

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GSEABase")

Maintainer	Bioconductor Package Maintainer <maintainer@bioconductor.org>
Author	Martin Morgan [aut], Seth Falcon [aut], Robert Gentleman [aut], Paul Villafuerte [ctb] ('GSEABase' vignette translation from Sweave to Rmarkdown / HTML), Bioconductor Package Maintainer [cre]
License	Artistic-2.0
Downloads rank	12376
Source branch	RELEASE_3_23
biocViews	GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Software

Dependencies

Depends: R (>= 2.6.0), BiocGenerics (>= 0.13.8), Biobase (>= 2.17.8), annotate (>= 1.45.3), methods, graph (>= 1.37.2)

Imports: AnnotationDbi, XML

Suggests: hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools, testthat, BiocStyle, knitr, RUnit

Reverse dependencies

Depends On Me (10): AGDEX, BicARE, CCPROMISE, Cepo, cpvSNP, GSVAdata, npGSEA, PROMISE, splineTimeR, TissueEnrich

Imports Me (35): AUCell, BioCor, canceR, Category, categoryCompare, clustermole, cosmosR, dreamlet, EnrichmentBrowser, GlobalAncova, GmicR, GSRI, GSVA, mastR, miRSM, mogsa, msigdb, oppar, PanomiR, phenoTest, postNet, PROMISE, RcisTarget, ReportingTools, scTGIF, signatureSearch, singIST, singleCellTK, singscore, slalom, sparrow, TFutils, TMSig, vissE, zenith

Suggests Me (12): BaseSet, BiocSet, epiregulon.extra, escape, gage, globaltest, GOstats, GSAR, GSEAlm, MAST, pathMED, phenoTest