GNOSIS
Genomics explorer using statistical and survival analysis in R
Bioconductor version: 3.23 · Package version: 1.10.0
GNOSIS incorporates a range of R packages enabling users to efficiently explore and visualise clinical and genomic data obtained from cBioPortal. GNOSIS uses an intuitive GUI and multiple tab panels supporting a range of functionalities. These include data upload and initial exploration, data recoding and subsetting, multiple visualisations, survival analysis, statistical analysis and mutation analysis, in addition to facilitating reproducible research.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GNOSIS") Details
| Maintainer | Lydia King <l.king18@universityofgalway.ie> |
| Author | Lydia King [aut, cre] (ORCID: <https://orcid.org/0000-0002-0696-9811>), Marcel Ramos [ctb] |
| License | MIT + file LICENSE |
| URL | https://github.com/Lydia-King/GNOSIS/ |
| Bug Reports | https://github.com/Lydia-King/GNOSIS/issues |
| Downloads rank | 203 |
| Source branch | RELEASE_3_23 |
| biocViews | GUI, ShinyApps, Software, Survival |
Documentation
Download
Dependencies
Depends: R (>= 4.3.0), shiny, shinydashboard, shinydashboardPlus, dashboardthemes, shinyWidgets, shinymeta, tidyverse, operator.tools, maftools
Imports: DT, fontawesome, shinycssloaders, cBioPortalData, shinyjs, reshape2, RColorBrewer, survival, survminer, stats, compareGroups, rpart, partykit, DescTools, car, rstatix, fabricatr, shinylogs, magrittr