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GNET2

Constructing gene regulatory networks from expression data through functional module inference

Bioconductor version: 3.23 · Package version: 1.28.0

Cluster genes to functional groups with E-M process. Iteratively perform TF assigning and Gene assigning, until the assignment of genes did not change, or max number of iterations is reached.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GNET2")

Details

MaintainerChen Chen <ccm3x@mail.missouri.edu>
AuthorChen Chen, Jie Hou and Jianlin Cheng
LicenseApache License 2.0
URLhttps://github.com/chrischen1/GNET2
Bug Reportshttps://github.com/chrischen1/GNET2/issues
StatusDeprecated
Downloads rank243
Source branchRELEASE_3_23
biocViewsGeneExpression, Network, NetworkInference, Regression, Software

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Dependencies

Depends: R (>= 3.6)

Imports: ggplot2, xgboost, Rcpp, reshape2, grid, DiagrammeR, methods, stats, matrixStats, graphics, SummarizedExperiment, dplyr, igraph, grDevices, utils

LinkingTo: Rcpp

Suggests: knitr, rmarkdown