GEOexplorer

GEOexplorer: a webserver for gene expression analysis and visualisation

Bioconductor version: 3.23 · Package version: 1.18.0

GEOexplorer is a webserver and R/Bioconductor package and web application that enables users to perform gene expression analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GEOexplorer")

Details

Maintainer	Guy Hunt <guy.hunt@kcl.ac.uk>
Author	Guy Hunt [aut, cre] (ORCID: <https://orcid.org/0000-0002-5217-2678>), Rafael Henkin [ctb, ths] (ORCID: <https://orcid.org/0000-0002-5511-5230>), Alfredo Iacoangeli [ctb, ths] (ORCID: <https://orcid.org/0000-0002-5280-5017>), Fabrizio Smeraldi [ctb, ths] (ORCID: <https://orcid.org/0000-0002-0057-8940>), Michael Barnes [ctb, ths] (ORCID: <https://orcid.org/0000-0001-9097-7381>)
License	GPL-3
URL	https://github.com/guypwhunt/GEOexplorer/
Bug Reports	https://github.com/guypwhunt/GEOexplorer/issues
Status	Deprecated
Downloads rank	152
Source branch	RELEASE_3_23
biocViews	DifferentialExpression, GeneExpression, MicroRNAArray, Microarray, RNASeq, Software, Transcriptomics, mRNAMicroarray

Documentation

GEOexplorer

Download

Source package

Dependencies

Depends: shiny, limma, Biobase, plotly, enrichR, R (>= 4.1.0)

Imports: DT, XML, httr, sva, xfun, edgeR, htmltools, factoextra, heatmaply, pheatmap, scales, shinyHeatmaply, shinybusy, ggplot2, stringr, umap, GEOquery, impute, grDevices, stats, graphics, markdown, knitr, utils, xml2, R.utils, readxl, shinycssloaders, car

Suggests: rmarkdown, usethis, testthat (>= 3.0.0)