GENIE3
GEne Network Inference with Ensemble of trees
Bioconductor version: 3.23 · Package version: 1.34.0
This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GENIE3")Details
| Maintainer | Van Anh Huynh-Thu <vahuynh@uliege.be> |
| Author | Van Anh Huynh-Thu, Sara Aibar, Pierre Geurts |
| License | GPL (>= 2) |
| Downloads rank | 1886 |
| Source branch | RELEASE_3_23 |
| biocViews | DecisionTree, GeneExpression, GraphAndNetwork, Network, NetworkInference, Regression, Software, SystemsBiology |
Documentation
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Dependencies
Imports: stats, reshape2, dplyr
Suggests: knitr, rmarkdown, foreach, doRNG, doParallel, Biobase, SummarizedExperiment, testthat, methods, BiocStyle
Reverse dependencies
Imports Me (3): BioNERO, MetNet, scGraphVerse