GDSArray
Representing GDS files as array-like objects
Bioconductor version: 3.23 · Package version: 1.32.0
GDS files are widely used to represent genotyping or sequence data. The GDSArray package implements the `GDSArray` class to represent nodes in GDS files in a matrix-like representation that allows easy manipulation (e.g., subsetting, mathematical transformation) in _R_. The data remains on disk until needed, so that very large files can be processed.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GDSArray")Details
| Maintainer | Xiuwen Zheng <zhengx@u.washington.edu> |
| Author | Qian Liu [aut], Martin Morgan [aut], Hervé Pagès [aut], Xiuwen Zheng [aut, cre] |
| License | GPL-3 |
| URL | https://github.com/Bioconductor/GDSArray |
| Bug Reports | https://github.com/Bioconductor/GDSArray/issues |
| Downloads rank | 310 |
| Source branch | RELEASE_3_23 |
| biocViews | DataRepresentation, GenotypingArray, Infrastructure, Sequencing, Software |
Documentation
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Dependencies
Depends: R (>= 3.5), gdsfmt, methods, BiocGenerics, DelayedArray (>= 0.5.32)
Imports: tools, S4Vectors (>= 0.17.34), SNPRelate, SeqArray
Suggests: testthat, knitr, markdown, rmarkdown, BiocStyle, BiocManager