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FinfoMDS

Multidimensional Scaling with F-ratio for microbiome visualization

Bioconductor version: 3.23 · Package version: 1.2.0

F-informed MDS is a new multidimensional scaling-based ordination method that configures data distribution based on the F-statistic (i.e., the ratio of dispersion between groups with shared or differing labels).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FinfoMDS")

Details

MaintainerSoobin Kim <soob.kim00@gmail.com>
AuthorSoobin Kim [aut, cre], Hyungseok Kim [aut]
LicenseGPL-3
URLhttps://github.com/soob-kim/FinfoMDS
Bug Reportshttps://github.com/soob-kim/FinfoMDS/issues
Downloads rank106
Source branchRELEASE_3_23
biocViewsDimensionReduction, Microbiome, MultidimensionalScaling, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.4.0)

Imports: phyloseq

Suggests: testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle