FindIT2

find influential TF and Target based on multi-omics data

Bioconductor version: 3.23 · Package version: 1.18.0

This package implements functions to find influential TF and target based on different input type. It have five module: Multi-peak multi-gene annotaion(mmPeakAnno module), Calculate regulation potential(calcRP module), Find influential Target based on ChIP-Seq and RNA-Seq data(Find influential Target module), Find influential TF based on different input(Find influential TF module), Calculate peak-gene or peak-peak correlation(peakGeneCor module). And there are also some other useful function like integrate different source information, calculate jaccard similarity for your TF.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FindIT2")