FeatSeekR
FeatSeekR an R package for unsupervised feature selection
Bioconductor version: 3.23 · Package version: 1.12.0
FeatSeekR performs unsupervised feature selection using replicated measurements. It iteratively selects features with the highest reproducibility across replicates, after projecting out those dimensions from the data that are spanned by the previously selected features. The selected a set of features has a high replicate reproducibility and a high degree of uniqueness.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FeatSeekR") Details
| Maintainer | Tuemay Capraz <tuemay.capraz@embl.de> |
| Author | Tuemay Capraz [cre, aut] (ORCID: <https://orcid.org/0000-0002-2547-067X>) |
| License | GPL-3 |
| URL | https://github.com/tcapraz/FeatSeekR |
| Bug Reports | https://github.com/tcapraz/FeatSeekR/issues |
| Downloads rank | 186 |
| Source branch | RELEASE_3_23 |
| biocViews | FeatureExtraction, MassSpectrometry, Software, StatisticalMethod |
Documentation
Download
Dependencies
Imports: pheatmap, MASS, pracma, stats, SummarizedExperiment, methods
Suggests: rmarkdown, knitr, BiocStyle, testthat (>= 3.0.0)