FGNet

Functional Gene Networks derived from biological enrichment analyses

Bioconductor version: 3.23 · Package version: 3.46.0

Build and visualize functional gene and term networks from clustering of enrichment analyses in multiple annotation spaces. The package includes a graphical user interface (GUI) and functions to perform the functional enrichment analysis through DAVID, GeneTerm Linker, gage (GSEA) and topGO.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FGNet")

Details

Maintainer	Sara Aibar <saibar@usal.es>
Author	Sara Aibar, Celia Fontanillo, Conrad Droste and Javier De Las Rivas.
License	GPL (>= 2)
URL	http://www.cicancer.org
Downloads rank	389
Source branch	RELEASE_3_23
biocViews	Annotation, Clustering, FunctionalGenomics, GO, GeneSetEnrichment, Network, NetworkEnrichment, Pathways, Software, Visualization

Documentation

FGNet

Download

Source package

Dependencies

Depends: R (>= 4.2.0)

Imports: igraph (>= 0.6), hwriter, R.utils, XML, plotrix, reshape2, RColorBrewer, png, methods, stats, utils, graphics, grDevices

Suggests: RCurl, gage, topGO, GO.db, reactome.db, RUnit, BiocGenerics, org.Sc.sgd.db, knitr, rmarkdown, AnnotationDbi, BiocManager

Reverse dependencies

Imports Me (1): IntramiRExploreR