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ExpoRiskR

Exposure-Aware Multi-Omics Risk Modeling

Bioconductor version: 3.23 · Package version: 1.0.0

ExpoRiskR provides tools for exposure-aware multi-omics risk modeling in translational and environmental health studies. The package aligns sample identifiers across exposure and multi-omics blocks, performs lightweight preprocessing, and fits exposure-adjusted association models to build interpretable microbe–metabolite networks. It also computes simple exposure perturbation summaries and generates publication-ready visualizations. Workflows support both matrix-based inputs and SummarizedExperiment objects.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ExpoRiskR")

Details

MaintainerPrem Prashant Chaudhary <chaudharyp2@nih.gov>
AuthorPrem Prashant Chaudhary [aut, cre] (ORCID: <https://orcid.org/0000-0002-3467-8608>)
LicenseMIT + file LICENSE
URLhttps://github.com/ppchaudhary/ExpoRiskR
Bug Reportshttps://github.com/ppchaudhary/ExpoRiskR/issues
Downloads rank45
Source branchRELEASE_3_23
biocViewsMetabolomics, Microbiome, Network, Regression, Software, SystemsBiology

Documentation

Download

Dependencies

Imports: stats, ggplot2, igraph, SummarizedExperiment, S4Vectors, utils

Suggests: BiocStyle, BiocCheck, knitr, rmarkdown, withr, testthat (>= 3.0.0)