ExperimentHub
Client to access ExperimentHub resources
Bioconductor version: 3.23 · Package version: 3.2.1
This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExperimentHub") Details
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| Author | Bioconductor Package Maintainer [cre], Martin Morgan [aut], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Valerie Oberchain [ctb], Kayla Morrell [ctb], Lori Shepherd [aut] |
| License | Artistic-2.0 |
| URL | https://github.com/Bioconductor/ExperimentHub |
| Bug Reports | https://github.com/Bioconductor/ExperimentHub/issues |
| Downloads rank | 10169 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, GUI, Infrastructure, Software, ThirdPartyClient |
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Dependencies
Depends: methods, BiocGenerics (>= 0.15.10), AnnotationHub (>= 3.99.3), BiocFileCache (>= 2.99.3)
Imports: utils, S4Vectors, BiocManager, rappdirs
Suggests: knitr, BiocStyle, rmarkdown, HubPub, GenomicAlignments
Enhances: ExperimentHubData
Reverse dependencies
Depends On Me (51): AWAggregatorData, BeadSorted.Saliva.EPIC, biscuiteerData, bodymapRat, CellMapperData, clustifyrdatahub, CoSIA, CoSIAdata, crisprScoreData, curatedAdipoChIP, CytoMethIC, DMRcatedata, DMRsegaldata, eoPredData, EpiMix.data, ewceData, FlowSorted.Blood.EPIC, FlowSorted.CordBloodCombined.450k, HDCytoData, HiContactsData, HighlyReplicatedRNASeq, HumanAffyData, iSEEhub, LRcell, mcsurvdata, MetaGxBreast, MetaGxOvarian, MetaGxPancreas, multiWGCNAdata, muscData, muSpaData, NanoporeRNASeq, NestLink, nullrangesData, ObMiTi, octad, octad.db, RNAmodR.Data, scMultiome, scpdata, SeqSQC, sesameData, SimBenchData, SpatialDatasets, spatialDmelxsim, STexampleData, tartare, TENxVisiumData, TENxXeniumData, VectraPolarisData, WeberDivechaLCdata
Imports Me (99): adductData, BiocHubsShiny, BioImageDbs, BloodGen3Module, CBNplot, celldex, CENTREprecomputed, cfToolsData, ChIPDBData, chipseqDBData, CLLmethylation, coMethDMR, CopyNeutralIMA, CTdata, curatedMetagenomicData, curatedPCaData, curatedTBData, curatedTCGAData, DeconvoBuddies, depmap, DMRcate, DoReMiTra, DropletTestFiles, DuoClustering2018, easierData, emtdata, EMTscoreData, ENmix, EpiMix, epimutacions, EpipwR, EpipwR.data, epiregulon, ExperimentHubData, FieldEffectCrc, gDNAinRNAseqData, GenomicDistributionsData, GSEABenchmarkeR, HarmonizedTCGAData, HCAData, HCATonsilData, HMP16SData, HMP2Data, hpar, humanHippocampus2024, imcdatasets, iModMix, iModMixData, JohnsonKinaseData, knowYourCG, LRcellTypeMarkers, m6Aboost, MACSr, marinerData, MatrixQCvis, MerfishData, methodical, MethReg, methylclock, methylclockData, MethylSeqData, microbiomeDataSets, Moonlight2R, MouseAgingData, MouseGastrulationData, MouseThymusAgeing, MsDataHub, msigdb, nmrdata, NxtIRFdata, orthos, orthosData, PhyloProfileData, postNet, preciseTADhub, ProteinGymR, raerdata, scaeData, scRNAseq, SFEData, shinyDSP, signatureSearch, signatureSearchData, SingleCellMultiModal, singleCellTK, SingleMoleculeFootprintingData, spatialFDA, spatialLIBD, TabulaMurisData, TabulaMurisSenisData, TENET, TENET.ExperimentHub, TENxBrainData, TENxBUSData, TENxPBMCData, TFEA.ChIP, tuberculosis, TumourMethData, xcoredata
Suggests Me (55): AlphaMissenseR, ANF, AnnotationHub, AWAggregator, bambu, Banksy, BioPlex, celaref, celarefData, CellMapper, crumblr, curatedAdipoArray, DeeDeeExperiment, DEqMS, DESpace, dreamlet, easyEWAS, ELMER, epimutacionsData, genomicInstability, GSE103322, GSE13015, GSE159526, GSE62944, GSVA, h5mread, HDF5Array, HVP, jazzPanda, mariner, metabom8, missMethyl, MsBackendRawFileReader, muleaData, multiWGCNA, muscat, MutSeqR, nullranges, planet, quantiseqr, rawDiag, rawrr, recountmethylation, smokingMouse, sosta, SparseArray, SPOTlight, standR, SubcellularSpatialData, TCGAbiolinks, TENxIO, tissueTreg, TransOmicsData, Voyager, xcore